Using different Jupyter kernels for different Conda environments

While using new Python 2 Kernel for Jupyter Notebook installed last time (Previous post), I found I cannot use Python libraries I had in my Python 2 in my local. Apparently, Python 2 environment used in the new Python 2 Kernel was not the same Python 2 environment that I have been using so far.

To resolve this issue and avoid confusion, I separated python environments using Conda and tie a specific environment to each Jupyter Kernel.

The first step is obviously creating a python environment (Later I will explain how I did it but here is the basic tutorial for this). But unfortunately, running Jupyter notebook from an environment does not mean the notebook will run in the same environment. It uses the default Conda environment instead of specific environment you are running the notebook from.

Installing nb_conda

I had to install nb_conda, which is an extension to provide Conda environment and an access to the associated packages from within Jupyter (Ref). Detailed info can be found here on GitHub.

This is how you install nb_conda.

$ source activate py2
(py2) $ conda install nb_conda

Checking Kernel from Jupyter

Run Jupyter Notebook after activating your environment. You can see now your Conda environment can be found in the kernel list. You can also check which kernel you are running the current notebook with from the top right.

(py2) $ Jupyter notebook

conda kernel found in jupyter

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s